Medical and Legal Domains

Natural Language Processing techniques usually need of some kind of adaptation when they are used in specific domains such as the medical and legal domains.

In the health domain we started collaborating in 2010 with the Galdakao-Usansolo hospital with the aim of improving the encoding of their health records with the International Classification of Diseases (ICD). Thereafter, and always in order to benefit patients' care we have worked...Read More

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Demos

Contracts

Projects

All HiTZ projects

Patents

System to detect Spanish medical entities in the medical domain

Publications

Alberto Blanco, Olatz Perez de Viñaspre, Alicia Pérez, Arantza Casillas

Boosting ICD multi-label classification of health records with contextual embeddings and label-granularity (2020)

Computer Methods and Programs in Biomedicine, Volume 188, 105264

Rebecka Weegar, Alicia Pérez, Arantza Casillas, Maite Oronoz

Recent advances in Swedish and Spanish medical entity recognition in clinical texts using deep neural approaches (2020)

BMC Medical Informatics and Decision Making

Sara Santiso

Adverse Drug Reaction extraction on Electronic Health Records written in Spanish (2020)

Procesamiento del Lenguaje Natural http://journal.sepln.org/sepln/ojs/ojs/index.php/pln/article/view/6203

Sara Santiso, Alicia Pérez, Arantza Casillas, Maite Oronoz

Neural negated entity recognition in Spanish electronic health records (2020)

Journal of Biomedical Informatics (JBI) https://doi.org/10.1016/j.jbi.2020.103419

Alberto Blanco, Alicia Pérez, Arantza Casillas, Daniel Cobos

Extracting Cause of Death from Verbal Autopsy with Deep Learning interpretable methods (2020)

IEEE Journal of Biomedical and Health Informatics

Santana, S and Pérez, A and Casillas, A

HapLap at eHealth-KD Challenge 2020 (2020)

Proceedings of the Iberian Languages Evaluation Forum co-located with 36th Conference of the Spanish Society for Natural Language Processing, IberLEF@ SEPLN

Alberto Blanco, Alicia Pérez, Arantza Casillas

Extreme multi-label ICD classification: sensitivity to hospital service and time (2020)

IEEE Access, Volume 8, 183534-183545

Alberto Blanco, Alicia Pérez, Arantza Casillas

Automatic Classification of Medical Records with Multi-label Classifiers and Similarity Match Coders (2020)

CEUR Workshop Proceedings, Vol 2696 - Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum

Kepa Sarasola, Iñaki Alegria, Olatz Perez de Viñaspre

Language Technology for Language Communities: An Overview based on Basque Experience 2020 (2020)file2 (2020)

Symposiwm Academaidd Technolegau Iaith Cymru 2020 -11-04 // Wales Academic Symposium on Language Technologies 2020-11-04

Iker de la Iglesia, Mikel Martinez-Puente, Alexander Platas, Iria San Miguel, Aitziber Atutxa, Koldo Gojenola

MEDIA team at the CLEF-2020 MultilingualInformation Extraction Task (2020)

Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum Thessaloniki, Greece, September 22-25, 2020.

Sara Santiso, Alicia Pérez, Arantza Casillas

Smoothing dense spaces for improved relation extraction between drugs and adverse reactions (2019)

International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.009

Aitziber Atutxa, Arantza Diaz de Ilarraza, koldo Gojenola,Maite Oronoz, Olatz Perez de Viñaspre

Interpretable Deep Learning to Map Diagnostic Texts to ICD10 Codes (2019)

International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.015 Link to publication: https://authors.elsevier.com/c/1ZANI4xGJ~syOE

Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, Alicia Pérez, Xabier Soto

Measuring the Effect of Different Types of Unsupervised Word Representations on Medical Named Entity Recognition (2019)

International Journal of Medical Informatics (https://doi.org/10.1016/j.ijmedinf.2019.05.022)

Alberto Blanco, Arantza Casillas, Alicia Pérez, Arantza Diaz de Ilarraza

Multi-label clinical document classification: Impact of label-density (2019)

Expert Systems with Applications, Volume 138, 112835

Olatz Perez-de-Viñaspre, Maite Oronoz, Natalia Elvira

KabiTermICD: Nested Term Based Translation of the ICD-10-CM into a Minor Language (2018)

Workshop "MultilingualBIO: Multilingual Biomedical Text Processing" of LREC 2018. Proceedings of the workshop. Miyazaki (Japan), 8th May 2018.

Jorge Pérez, Alicia Pérez, Arantza Casillas, Koldo Gojenola

Cardiology record multi-label classification using Latent Dirichlet Allocation (2018)

Computer Methods and Programs in Biomedicine https://doi.org/10.1016/j.cmpb.2018.07.002

Aitziber Atutxa, Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, V. Fresno, Koldo Gojenola, R. Martinez, Maite Oronoz, Olatz Perez-de-Viñaspre

IxaMed at CLEF eHealth 2018 Task 1: ICD10 Coding with a Sequence-to-Sequence approach (2018)

CLEF 2018 Online Working Notes. CEUR-WS

Mikel Laburu, Alicia Pérez, Arantza Casillas, Iakes Goenaga, Maite Oronoz

Can I find information about rare diseases in some other language? (2018)

IEEE International Conference on Bioinformatics and Biomedicine. Artificial Intelligence techniques for Biomedicine and Healthcare. Madrid (December, 2018); ISBN: 978-1-5386-5487-3; Pgs: 2102-2108

All HiTZ publications

domains_tabs_full

All HiTZ projects

System to detect Spanish medical entities in the medical domain

Alberto Blanco, Olatz Perez de Viñaspre, Alicia Pérez, Arantza Casillas

Boosting ICD multi-label classification of health records with contextual embeddings and label-granularity (2020)

Computer Methods and Programs in Biomedicine, Volume 188, 105264

Rebecka Weegar, Alicia Pérez, Arantza Casillas, Maite Oronoz

Recent advances in Swedish and Spanish medical entity recognition in clinical texts using deep neural approaches (2020)

BMC Medical Informatics and Decision Making

Sara Santiso

Adverse Drug Reaction extraction on Electronic Health Records written in Spanish (2020)

Procesamiento del Lenguaje Natural http://journal.sepln.org/sepln/ojs/ojs/index.php/pln/article/view/6203

Sara Santiso, Alicia Pérez, Arantza Casillas, Maite Oronoz

Neural negated entity recognition in Spanish electronic health records (2020)

Journal of Biomedical Informatics (JBI) https://doi.org/10.1016/j.jbi.2020.103419

Alberto Blanco, Alicia Pérez, Arantza Casillas, Daniel Cobos

Extracting Cause of Death from Verbal Autopsy with Deep Learning interpretable methods (2020)

IEEE Journal of Biomedical and Health Informatics

Santana, S and Pérez, A and Casillas, A

HapLap at eHealth-KD Challenge 2020 (2020)

Proceedings of the Iberian Languages Evaluation Forum co-located with 36th Conference of the Spanish Society for Natural Language Processing, IberLEF@ SEPLN

Alberto Blanco, Alicia Pérez, Arantza Casillas

Extreme multi-label ICD classification: sensitivity to hospital service and time (2020)

IEEE Access, Volume 8, 183534-183545

Alberto Blanco, Alicia Pérez, Arantza Casillas

Automatic Classification of Medical Records with Multi-label Classifiers and Similarity Match Coders (2020)

CEUR Workshop Proceedings, Vol 2696 - Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum

Kepa Sarasola, Iñaki Alegria, Olatz Perez de Viñaspre

Language Technology for Language Communities: An Overview based on Basque Experience 2020 (2020)file2 (2020)

Symposiwm Academaidd Technolegau Iaith Cymru 2020 -11-04 // Wales Academic Symposium on Language Technologies 2020-11-04

Iker de la Iglesia, Mikel Martinez-Puente, Alexander Platas, Iria San Miguel, Aitziber Atutxa, Koldo Gojenola

MEDIA team at the CLEF-2020 MultilingualInformation Extraction Task (2020)

Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum Thessaloniki, Greece, September 22-25, 2020.

Sara Santiso, Alicia Pérez, Arantza Casillas

Smoothing dense spaces for improved relation extraction between drugs and adverse reactions (2019)

International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.009

Aitziber Atutxa, Arantza Diaz de Ilarraza, koldo Gojenola,Maite Oronoz, Olatz Perez de Viñaspre

Interpretable Deep Learning to Map Diagnostic Texts to ICD10 Codes (2019)

International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.015 Link to publication: https://authors.elsevier.com/c/1ZANI4xGJ~syOE

Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, Alicia Pérez, Xabier Soto

Measuring the Effect of Different Types of Unsupervised Word Representations on Medical Named Entity Recognition (2019)

International Journal of Medical Informatics (https://doi.org/10.1016/j.ijmedinf.2019.05.022)

Alberto Blanco, Arantza Casillas, Alicia Pérez, Arantza Diaz de Ilarraza

Multi-label clinical document classification: Impact of label-density (2019)

Expert Systems with Applications, Volume 138, 112835

Olatz Perez-de-Viñaspre, Maite Oronoz, Natalia Elvira

KabiTermICD: Nested Term Based Translation of the ICD-10-CM into a Minor Language (2018)

Workshop "MultilingualBIO: Multilingual Biomedical Text Processing" of LREC 2018. Proceedings of the workshop. Miyazaki (Japan), 8th May 2018.

Jorge Pérez, Alicia Pérez, Arantza Casillas, Koldo Gojenola

Cardiology record multi-label classification using Latent Dirichlet Allocation (2018)

Computer Methods and Programs in Biomedicine https://doi.org/10.1016/j.cmpb.2018.07.002

Aitziber Atutxa, Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, V. Fresno, Koldo Gojenola, R. Martinez, Maite Oronoz, Olatz Perez-de-Viñaspre

IxaMed at CLEF eHealth 2018 Task 1: ICD10 Coding with a Sequence-to-Sequence approach (2018)

CLEF 2018 Online Working Notes. CEUR-WS

Mikel Laburu, Alicia Pérez, Arantza Casillas, Iakes Goenaga, Maite Oronoz

Can I find information about rare diseases in some other language? (2018)

IEEE International Conference on Bioinformatics and Biomedicine. Artificial Intelligence techniques for Biomedicine and Healthcare. Madrid (December, 2018); ISBN: 978-1-5386-5487-3; Pgs: 2102-2108

All HiTZ publications